| BAUER, M.A. | KARI, L. | SEDIG, K. |
| LING, C.X. | SOLIS-OBA, R. | |
| DALEY, M. | LUTFIYYA, H. | WATT, S.M. |
| EL-SAKKA, M.R. | MA, B. | WEBBER, R.E. |
| MERCER, R.E. | YU, S. | |
| ILIE, L. | OSBORN, S.L. | ZHANG, K.Z. |
Abdu, H., H. Lutfiyya, and M.A. Bauer.
2004 - Nov. A Framework for Determining Efficient Management
Configurations. Computer Networks-the International Journal of
Computer and Telecommunications Networking 46 (4): 437-463.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Perry, M., and M. Bauer. 2004.
Policies, Rules and Their Engines: What Do They Mean for Slas? Knowledge-Based
Intelligent Information and Engineering Systems, Pt 1, Proceedings.
Lecture Notes in Computer Science. 3213. 1164-1170.
Type: Conference Proceedings
Boykov, Y., and V. Kolmogorov.
2004 - Sept. An Experimental Comparison of Min-Cut/Max-Flow Algorithms
for Energy Minimization in Vision. Ieee Transactions on Pattern
Analysis and Machine Intelligence 26 (9): 1124-1137.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Daley, M., and M. Domaratzki.
2004. On Codes Defined by Bio-Operations. Developments in Language
Theory, Proceedings. Lecture Notes in Computer Science. 3340.
127-138.
Type: Conference Proceedings
Daley, M., and I. Mcquillan.
2005 - June. Formal Modelling of Viral Gene Compression. International
Journal of Foundations of Computer Science 16 (3): 453-469.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Daley, M., and I. Mcquillan.
2005 - Feb. Template-Guided Dna Recombination. Theoretical Computer
Science 330 (2): 237-250.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Daley, M., and I. Mcquillan.
2005. Viral Gene Compression: Complexity and Verification. Implementation
and Application of Automata 3317: 102-112.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Abdel-Dayem, A.R., A.K. Hamou, and
M.R. El-Sakka. 2004. Novel Adaptive Filtering for Salt-and-Pepper
Noise Removal From Binary Document Images. Image Analysis and
Recognition, Pt 2, Proceedings. Lecture Notes in Computer
Science. 3212. 191-199.
Type: Conference Proceedings
Ouda, A.H., and M.R. El-Sakka.
2004. A Secure and Localizing Watermarking Technique for Image
Authentication. Image Analysis and Recognition, Pt 2, Proceedings.
Lecture Notes in Computer Science. 3212. 759-769.
Type: Conference Proceedings
Ye, J.T., R.E. Webber, and I.
Gargantini. 2005. On the Impulse Method for Cloth Animation. Computational
Science - Iccs 2005, Pt 2. Lecture Notes in Computer Science.
3515. 331-334.
Type: Conference Proceedings
Constantinescu, S., and L. Ilie.
2005 - June. Generalised Fine and Wilf's Theorem for Arbitrary Number
of Periods. Theoretical Computer Science 339 (1): 49-60.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Ilie, L., G. Navarro, and S. Yu.
2004. On Nfa Reductions. Theory Is Forever: Essays Dedicated to
Arto Salomaa on the Occasion of His 70th Birthday 3113: 112-124.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Ilie, L., P. Ochem, and J. Shallit.
2004. A Generalization of Repetition Threshold. Mathematical
Foundations of Computer Science 2004, Proceedings. Lecture Notes
in Computer Science. 3153. 818-826.
Type: Conference Proceedings
Ilie, L., R. Solis-Oba, and S. Yu.
2005. Reducing the Size of Nfas by Using Equivalences and Preorders. Combinatorial
Pattern Matching, Proceedings. Lecture Notes in Computer Science.
3537. 310-321.
Type: Conference Proceedings
Freund, R., L. Kari, M. Oswald, and
P. Sosik. 2005 - Feb. Computationally Universal P Systems Without
Priorities: Two Catalysts Are Sufficient. Theoretical Computer
Science 330 (2): 251-266.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Kari, L., and S. Konstantinidis.
2005 - Feb. Language Equations, Maximality and Error-Detection. Journal
of Computer and System Sciences 70 (1): 157-178.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Kari, L., S. Konstantinidis, and P.
Sosik. 2005. Bond-Free Languages: Formalizations, Maximality and
Construction Methods. Dna Computing. Lecture Notes in
Computer Science. 3384. 169-181.
Type: Conference Proceedings
Kari, L., S. Konstantinidis, and P.
Sosik. 2005 - Apr. On Properties of Bond-Free Dna Languages. Theoretical
Computer Science 334 (1-3): 131-159.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Kari, L., S. Konstantinidis, and P.
Sosik. 2005 - June. Operations on Trajectories With Applications to
Coding and Bioinformatics. International Journal of Foundations of
Computer Science 16 (3): 531-546.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Kari, L., S. Konstantinidis, and P.
Sosik. 2005. Preventing Undesirable Bonds Between Dna Codewords. Dna
Computing. Lecture Notes in Computer Science. 3384. 182-191.
Type: Conference Proceedings
Kari, L., S. Konstantinidis, and P.
Sosik. 2005. Substitutions, Trajectories and Noisy Channels. Implementation
and Application of Automata 3317: 202-212.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Kari, L., S. Konstantinidis, P.
Sosik, and G. Thierrin. 2005. On Hairpin-Free Words and Languages. Developments
in Language Theory, Proceedings. Lecture Notes in Computer
Science. 3572. 296-307.
Type: Conference Proceedings
Kari, L., and P. Sosik. 2005 -
Feb. Aspects of Shuffle and Deletion on Trajectories. Theoretical
Computer Science 332 (1-3): 47-61.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Wang, Y.W., K. Hill, S. Singh, and
L. Kari. 2005 - Feb. The Spectrum of Genomic Signatures: From
Dinucleotides to Chaos Game Representation. Gene 346: 173-185.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Fu, Y., Q. Yang, C.X. Ling, H.P.
Wang, D.Q. Li, R.X. Sun, H. Zhou, R. Zeng, Y.Q. Chen, S.M. He, and W.
Gao. 2004. A Kernel-Based Case Retrieval Algorithm With Application
to Bioinformatics. Pricai 2004: Trends in Artificial Intelligence,
Proceedings. Lecture Notes in Artificial Intelligence. 3157.
544-553.
Type: Conference Proceedings
Fu, Y., Q. Yang, R.X. Sun, D.Q. Li,
R. Zeng, C.X. Ling, and W. Gao. 2004 - Aug. Exploiting the Kernel
Trick to Correlate Fragment Ions for Peptide Identification Via Tandem
Mass Spectrometry. Bioinformatics 20 (12): 1948-1954.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Huang, J., and C.X. Ling. 2005 -
Mar. Using Auc and Accuracy in Evaluating Learning Algorithms. Ieee
Transactions on Knowledge and Data Engineering 17 (3): 299-310.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Wang, J.N., and C.X. Ling. 2004.
Artificial Aging of Faces by Support Vector Machines. Advances in
Artificial Intelligence 3060: 499-503.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Zheng, J.H., C. Ling, Z.Z. Shi, J.
Xue, and X.Y. Li. 2004. A Multi-Objective Genetic Algorithm Based
on Quick Sort. Advances in Artificial Intelligence 3060:
175-186.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Abdu, H., H. Lutfiyya, and M.A. Bauer.
2004 - Nov. A Framework for Determining Efficient Management
Configurations. Computer Networks-the International Journal of
Computer and Telecommunications Networking 46 (4): 437-463.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Han, Y., B. Ma, and K.Z. Zhang.
2005 - June. An Automata Approach to Match Gapped Sequence Tags Against
Protein Database. International Journal of Foundations of Computer
Science 16 (3): 487-497.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Han, Y.H., B. Ma, and K.Z. Zhang.
2005. An Automata Approach to Match Gapped Sequence Tags Against
Protein Database. Implementation and Application of Automata.
Lecture Notes in Computer Science. 3317. 167-177.
Type: Conference Proceedings
Kisman, D., M. Li, B. Ma, and L. Wang.
2005 - Feb. Tpatternhunter: Gapped, Fast and Sensitive Translated
Homology Search. Bioinformatics 21 (4): 542-544.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Li, M., X. Chen, X. Li, B. Ma, and
P.M.B. Vitanyi. 2004 - Dec. The Similarity Metric. Ieee
Transactions on Information Theory 50 (12): 3250-3264.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Ma, B., L.Y. Wu, and K.Z. Zhang.
2005. Improving the Sensitivity and Specificity of Protein Homology
Search by Incorporating Predicted Secondary Structures. Computational
Science - Iccs 2005, Pt 2. Lecture Notes in Computer Science.
3515. 960-967.
Type: Conference Proceedings
Ma, B., and K.Z. Zhang. 2005. On
the Longest Common Rigid Subsequence Problem. Combinatorial Pattern
Matching, Proceedings. Lecture Notes in Computer Science. 3537.
11-20.
Type: Conference Proceedings
Ma, B., K.Z. Zhang, and C.Z. Liang.
2005 - May. An Effective Algorithm for Peptide De Novo Sequencing From
Ms/Ms Spectra. Journal of Computer and System Sciences 70 (3):
418-430.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Xu, J., D.G. Brown, M. Li, and B. Ma.
2004. Optimizing Multiple Spaced Seeds for Homology Search. Combinatorial
Pattern Matching, Proceedings. Lecture Notes in Computer Science.
3109. 47-58.
Type: Conference Proceedings
Mercer, R.E., C. Di Marco, and F.W.
Kroon. 2004. The Frequency of Hedging Cues in Citation Contexts in
Scientific Writing. Advances in Artificial Intelligence 3060:
75-88.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Sheng, S.L., and S.L. Osborn.
2004. A Classifier-Based Approach to User-Role Assignment for Web
Applications. Secure Data Management, Proceedings. Lecture
Notes in Computer Science. 3178. 163-171.
Type: Conference Proceedings
Morey, J., and K. Sedig. 2004 -
Nov. Adjusting Degree of Visual Complexity: an Interactive Approach for
Exploring Four-Dimensional Polytopes. Visual Computer 20 (8-9):
565-585.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Morey, J., and K. Sedig. 2004.
Using Indexed-Sequential Geometric Glyphs to Explore Visual Patterns. Computational
Science - Iccs 2004, Pt 3, Proceedings. Lecture Notes in Computer
Science. 3038. 996-1003.
Type: Conference Proceedings
Sedig, K. 2004. Need for a
Prescriptive Taxonomy of Interaction for Mathematical Cognitive Tools.
Computational Science - Iccs 2004, Pt 3, Proceedings. Lecture
Notes in Computer Science. 3038. 1030-1037.
Type: Conference Proceedings
Ilie, L., R. Solis-Oba, and S. Yu.
2005. Reducing the Size of Nfas by Using Equivalences and Preorders. Combinatorial
Pattern Matching, Proceedings. Lecture Notes in Computer Science.
3537. 310-321.
Type: Conference Proceedings
Jansen, K., M. Mastrolilli, and R.
Solis-Oba. 2005 - Apr. Approximation Algorithms for Flexible Job
Shop Problems. International Journal of Foundations of Computer
Science 16 (2): 361-379.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Smirnova, E.S., C.M. So, and S.M.
Watt. 2004. An Architecture for Distributed Mathematical Web
Services. Mathematical Knowledge Management, Proceedings.
Lecture Notes in Computer Science. 3119. 363-377.
Type: Conference Proceedings
Ye, J.T., R.E. Webber, and I.
Gargantini. 2005. On the Impulse Method for Cloth Animation. Computational
Science - Iccs 2005, Pt 2. Lecture Notes in Computer Science.
3515. 331-334.
Type: Conference Proceedings
Campeanu, C., N. Santean, and S. Yu.
2005 - Jan. Mergible States in Large Nfa. Theoretical Computer
Science 330 (1): 23-34.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Campeanu, C., and S. Yu. 2004 -
Dec. Pattern Expressions and Pattern Automata. Information
Processing Letters 92 (6): 267-274.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Ilie, L., G. Navarro, and S. Yu.
2004. On Nfa Reductions. Theory Is Forever: Essays Dedicated to
Arto Salomaa on the Occasion of His 70th Birthday 3113: 112-124.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Ilie, L., R. Solis-Oba, and S. Yu.
2005. Reducing the Size of Nfas by Using Equivalences and Preorders. Combinatorial
Pattern Matching, Proceedings. Lecture Notes in Computer Science.
3537. 310-321.
Type: Conference Proceedings
Salomaa, K., and S. Yu. 2005 -
June. Special Issue - 9th
International Conference on Implementation and Application of Automata
(Ciaa 2004) - Preface. International Journal of Foundations of
Computer Science 16 (3): 399-401. Editorial Material.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Alkan, C., E. Karakoc, J.H. Nadeau,
S.C. Sahinalp, and K.Z. Zhang. 2005. Rna-Rna Interaction Prediction
and Antisense Rna Target Search. Research in Computational
Molecular Biology, Proceedings. Lecture Notes in Computer
Science. 3500. 152-171.
Type: Conference Proceedings
Chen, T.L., J.F. Wang, and K.Z. Zhang.
2004 - Dec. A Wavelet Transform Based Method for Road Centerline
Extraction. Photogrammetric Engineering and Remote Sensing 70
(12): 1423-1431.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Han, Y., B. Ma, and K.Z. Zhang.
2005 - June. An Automata Approach to Match Gapped Sequence Tags Against
Protein Database. International Journal of Foundations of Computer
Science 16 (3): 487-497.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)
Han, Y.H., B. Ma, and K.Z. Zhang.
2005. An Automata Approach to Match Gapped Sequence Tags Against
Protein Database. Implementation and Application of Automata.
Lecture Notes in Computer Science. 3317. 167-177.
Type: Conference Proceedings
Ma, B., L.Y. Wu, and K.Z. Zhang.
2005. Improving the Sensitivity and Specificity of Protein Homology
Search by Incorporating Predicted Secondary Structures. Computational
Science - Iccs 2005, Pt 2. Lecture Notes in Computer Science.
3515. 960-967.
Type: Conference Proceedings
Ma, B., and K.Z. Zhang. 2005. On
the Longest Common Rigid Subsequence Problem. Combinatorial Pattern
Matching, Proceedings. Lecture Notes in Computer Science. 3537.
11-20.
Type: Conference Proceedings
Ma, B., K.Z. Zhang, and C.Z. Liang.
2005 - May. An Effective Algorithm for Peptide De Novo Sequencing From
Ms/Ms Spectra. Journal of Computer and System Sciences 70 (3):
418-430.
Type: Journal Article
Refereed/Peer-Reviewed: YES NO (Please circle)