Leaders in Learning: Publications of Faculty & Staff


 

Biochemistry 2004-2005

Ainsworth, P.J.

Ainsworth, P.J., D. Koscinski, B.P. Fraser, and J.A. Stuart. 2004. Family Cancer Histories Predictive of a High Risk of Hereditary Non-Polyposis Colorectal Cancer Associate Significantly With a Genomic Rearrangement in Hmsh2 or Hmlh1. Clinical Genetics 66 (3): 183-188.

Vanhorne, J.B., S.D. Andrew, K.J. Harrison, S.A.M. Taylor, B. Thomas, T.J. Mcdonald, P.J. Ainsworth, and L.M. Mulligan. 2005. A Model for Gfr Alpha 4 Function and a Potential Modifying Role in Multiple Endocrine Neoplasia 2. Oncogene 24 (6): 1091-1097.


Behme, M.T.

Dupre, J., M.T. Behme, and T.J. Mcdonald. 2004. Exendin-4 Normalized Postcibal Glycemic Excursions in Type 1 Diabetes. Journal of Clinical Endocrinology and Metabolism 89 (7): 3469-3473.


Choy, W.Y.

Choy, W.Y., Z. Zhou, Y. Bai, and L.E. Kay. 2005. An 15N NMR spin relaxation dispersion study of the folding of a pair of engineered mutants of apocytochrome b562. Journal of the American Chemical Society 127 (14): 5066-5072.

Tugarinov, V., W.Y. Choy, E. Kupce, and L.E. Kay. 2004. Addressing the Overlap Problem in the Quantitative Analysis of Two-Dimensional NMR Spectra: Application to 15N Relaxation Measurements. Journal of Biomolecular NMR 30: 347-352.

Tugarinov, V., W.Y. Choy, V.Y. Orekhov, and L.E. Kay. 2005. Solution NMR-derived global fold of a monomeric 82 kDa enzyme. Proceedings of the National Academy of Sciences of the United States of America 102 (3): 622-627.


Davey, M.J.

Tackett, A.J., D.J. Dilworth, M.J. Davey, M. O'Donnell, J.D. Aitchison, M.P. Rout, and B.T. Chait. 2005. Proteomics and genomic characterization of chromatin compleses at a boundary. The Journal of Cell Biology 169 (1): 35-47.


Dimattia, G.E.

Gagliardi, A.D., E.Y.W. Kuo, S. Raulic, G.F. Wagner, and G.E. Dimattia. 2005. Human Stanniocalcin-2 Exhibits Potent Growth-Suppressive Properties in Transgenic Mice Independently of Growth Hormone and Igfs. American Journal of Physiology-Endocrinology and Metabolism 288 (1): E92-E105.

Paciga, M., G.E. Dimattia, and G.F. Wagner. 2004. Regulation of Luteal Cell Big Stanniocalcin Production and Secretion. Endocrinology 145 (9): 4204-4212.


Dunn, S.D.

Gloor, G.B., L.C. Martin, L.M. Wahl, and S.D. Dunn. 2005. Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions. Biochemistry 44 (19): 7156-7165.

Motz, C., T. Hornung, M. Kersten, D.T. Mclachlin, S.D. Dunn, J.G. Wise, and P.D. Vogel. 2004. The Subunit B Dimer of the Fof1-Atp Synthase Interaction With F-1-Atpase as Deduced by Site-Specific Spin-Labeling. Journal of Biological Chemistry 279 (47): 49074-49081.


Edgell, D.R.

Sebulsky, M.T., C.D. Speziali, B.H. Shilton, D.R. Edgell, and D.E. Heinrichs. 2004. Fhud1, a Ferric Hydroxamate-Binding Lipoprotein in Staphylococcus Aureus - a Case of Gene Duplication and Lateral Transfer. Journal of Biological Chemistry 279 (51): 53152-53159.


Gloor, G.B.

Dempsey, B.R., M. Wrona, J.M. Moulin, G.B. Gloor, F. Jalilehvand, G. Lajoie, G.S. Shaw, and B.H. Shilton. 2004. Solution Nmr Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the Seca Atpase. Biochemistry 43 (29): 9361-9371.

Gloor, G.B., L.C. Martin, L.M. Wahl, and S.D. Dunn. 2005. Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions. Biochemistry 44 (19): 7156-7165.


Goldberg, H.A.

Keykhosravani, M., A. Doherty-Kirby, C.J. Zhang, D. Brewer, H.A. Goldberg, G.K. Hunter, and G. Lajoie. 2005. Comprehensive Identification of Post-Translational Modifications of Rat Bone Osteopontin by Mass Spectrometry. Biochemistry 44 (18): 6990-7003.

Nanci, A., R.M. Wazen, S.F. Zalzal, M. Fortin, H.A. Goldberg, G.K. Hunter, and D.L. Ghitescu. 2004. A Tracer Study With Systemically and Locally Administered Dinitrophenylated Osteopontin. Journal of Histochemistry & Cytochemistry 52 (12): 1591-1600.

Takayama, T., N. Suzuki, M. Narukawa, H.A. Goldberg, K. Otsuka, and K. Ito. 2005. Enamel Matrix Derivative Is a Potent Inhibitor of Breast Cancer Cell Attachment to Bone. Life Sciences 76 (11): 1211-1221.

Tye, C.E., G.K. Hunter, and H.A. Goldberg. 2005. Identification of the Type I Collagen-Binding Domain of Bone Sialoprotein and Characterization of the Mechanism of Interaction. Journal of Biological Chemistry 280 (14): 13487-13492.


Grant, C.W.

Goodyear, D.J., S. Sharpe, C.W.M. Grant, and M.R. Morrow. 2005. Molecular Dynamics Simulation of Transmembrane Polypeptide Orientational Fluctuations. Biophysical Journal 88 (1): 105-117.


Han, V.K.M

Carter, A.M., M.J. Kingston, K.K. Han, D.M. Mazzuca, K. Nygard, and V.U. Ca. 2005. Altered Expression of IGFs and IGF-Binding Proteins During Intrauterine Growth Restriction in Guinea Pigs. Journal of Endocrinology 184 (1): 179-189.

Cingel-Ristic, V., B.F. Schrijvers, A.K. Van Vliet, R. Rasch, V.K.M. Han, S.L.S. Drop, and A. Flyvbjerg. 2005. Kidney Growth in Normal and Diabetic Mice Is Not Affected by Human Insulin-Like Growth Factor Binding Protein-1 Administration. Experimental Biology and Medicine 230 (2): 135-143.

Jasinska, A., V. Han, A.T. Fazleabas, and J.J. Kim. 2004. Induction of Insulin-Like Growth Factor Binding Protein-1 Expression in Baboon Endometrial Stromal Cells by Cells of Trophoblast Origin. Journal of the Society for Gynecologic Investigation 11 (6): 399-405.

Vasileiadis, G.T., N. Gelman, V.K.M. Han, L.A. Williams, R. Mann, Y. Bureau, and R.T. Thompson. 2004. Uncomplicated Intraventricular Hemorrhage Is Followed by Reduced Cortical Volume at Near-Term Age. Pediatrics 114 (3): E367-E372.

Williams, L.A., N. Gelman, P.A. Picot, D.S. Lee, J.R. Ewing, V.K. Han, and R.T. Thompson. 2005. Neonatal Brain: Regional Variability of In-Vivo MR Imaging Relaxation Rates at 3.0 T-Initial Experience. Radiology 235 (2): 595-603.

Zygmunt, M., T. McKinnon, F. Herr, P.K. Lala, and V.K.M. Han. 2005. HCG ncreases Trophoblast Migration In-Vitro via the Insulin-Like Growth Factor-Ii/Mannose-6 Phosphate Receptor. Molecular Human Reproduction 11 (4): 261-267.


Haniford, D.B.

Humayun, S., S.J. Wardle, B.H. Shilton, P.A. Pribil, J. Liburd, and D.B. Haniford. 2005. Tn10 Transposase Mutants With Altered Transpososome Unfolding Properties Are Defective in Hairpin Formation. Journal of Molecular Biology 346 (3): 703-716.


Hegele, R.A.

Al-Shali, K., H.N. Cao, N. Knoers, A.R. Hermus, C.J. Tack, and R.A. Hegele. 2004. A Single-Base Mutation in the Peroxisome Proliferator-Activated Receptor Gamma 4 Promoter Associated With Altered in Vitro Expression and Partial Lipodystrophy. Journal of Clinical Endocrinology and Metabolism 89 (11): 5655-5660.

Al-Shali, K., A.A. House, A.J.G. Hanley, H.M.R. Khan, S.B. Harris, M. Mamakeesick, B. Zinman, A. Fenster, J.D. Spence, and R.A. Hegele. 2005. Differences Between Carotid Wall Morphological Phenotypes Measured by Ultrasound in One, Two and Three Dimensions. Atherosclerosis 178 (2): 319-325.

Al-Shali, K.Z., A.A. House, A.J.G. Hanley, H.M.R. Khan, S.B. Harris, B. Zinman, M. Mamakeesick, A. Fenster, J.D. Spence, and R.A. Hegele. 2004. Genetic Variation in Pparg Encoding (Peroxisome Proliferator-Activated Receptor Gamma) Associated With Carotid Atherosclerosis. Stroke 35 (9): 2036-2040.

Argmann, C.A., J.Y. Edwards, C.G. Sawyez, C.H. O'Neil, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2005. Regulation of Macrophage Cholesterol Efflux Through Hydroxymethylglutaryl-Coa Reductase Inhibition. Journal of Biological Chemistry 280 (23): 22212-22221.

Argmann, C.A., C.G. Sawyez, S.H. Li, Z.X. Nong, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2004. Human Smooth Muscle Cell Subpopulations Differentially Accumulate Cholesteryl Ester When Exposed to Native and Oxidized Lipoproteins. Arteriosclerosis Thrombosis and Vascular Biology 24 (7): 1290-1296.

Mckinney, J.L., D.J. Murdoch, J. Wang, J. Robinson, C. Biltcliffe, H.M.R. Khan, P.M. Walker, J. Savage, I. Skerjanc, and R.A. Hegele. 2004. Venn Analysis as Part of a Bioinformatic Approach to Prioritize Expressed Sequence Tags From Cardiac Libraries. Clinical Biochemistry 37 (11): 953-960.

Segev, A., R.A. Hegele, H.K. Lau, J.D. Sparkes, J.M. Teitel, R.J. Chisholm, and B.H. Strauss. 2004. Thr325ile Polymorphism of the Tafi Gene Is Related to Tafi Antigen Plasma Levels and Angiographic Restenosis After Percutaneous Coronary Interventions. Thrombosis Research 114 (2): 137-141.

Tadiboyina, V.T., A. Rupar, P. Atkison, A. Feigenbaum, J. Kronick, J. Wang, and R.A. Hegele. 2005. Novel Mutation in Dguok in Hepatocerebral Mitochondrial Dna Depletion Syndrome Associated With Cystathioninuria. American Journal of Medical Genetics Part A 135A (3): 289-291.

Walker, B.D., A.D. Krahn, G.J. Klein, A.C. Skanes, R. Yee, J. Wang, and R.A. Hegele. 2005. Effect of Change in Posture and Exercise on Repolarization in Patients With Long Qt Syndrome With Herg Channel Mutations. Canadian Journal of Cardiology 21 (1): 33-38.

Wang, J., T. Joy, D. Mymin, J. Frohlich, and R.A. Hegele. 2004. Phenotypic Heterogeneity of Sitosterolemia. Journal of Lipid Research 45 (12): 2361-2367.

Wang, J., J.F. Robinson, H.M.R. Khan, D.E. Carter, J. Mckinney, B.A. Miskie, and R.A. Hegele. 2004. Optimizing RNA Extraction Yield From Whole Blood for Microarray Gene Expression Analysis. Clinical Biochemistry 37 (9): 741-744.


Hudson, R.H.E.

Hudson, R.H.E., A.K. Dambenieks, and R.D. Viirre. 2004. Fluorescent 7-Deazapurine Derivatives From 5-Iodocytosine Via a Tandem Cross-Coupling-Annulation Reaction With Terminal Alkynes. Synlett (13): 2400-2402.

Hudson, R.H.E., M. Goncharenko, A.P. Wallman, and F. Wojciechowski. 2005. Pna-Directed Triple-Helix Formation by N-7-Xanthine. Synlett (9): 1442-1446.

Hudson, R.H.E., R.D. Viirre, Y.H. Liu, F. Wojciechowski, and A.K. Dambenieks. 2004. Chemistry for the Synthesis of Nucleobase-Modified Peptide Nucleic Acid. Pure and Applied Chemistry 76 (7-8): 1591-1598.


Huff, M.W.

Allister, E.M., N.M. Borradaile, J.Y. Edwards, and M.W. Huff. 2005. Inhibition of Microsomal Triglyceride Transfer Protein Expression and Apolipoprotein B100 Secretion by the Citrus Flavonoid Naringenin and by Insulin Involves Activation of the Mitogen-Activated Protein Kinase Pathway in Hepatocytes. Diabetes 54 (6): 1676-1683.

Argmann, C.A., J.Y. Edwards, C.G. Sawyez, C.H. O'Neil, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2005. Regulation of Macrophage Cholesterol Efflux Through Hydroxymethylglutaryl-Coa Reductase Inhibition. Journal of Biological Chemistry 280 (23): 22212-22221.

Argmann, C.A., C.G. Sawyez, S.H. Li, Z.X. Nong, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2004. Human Smooth Muscle Cell Subpopulations Differentially Accumulate Cholesteryl Ester When Exposed to Native and Oxidized Lipoproteins. Arteriosclerosis Thrombosis and Vascular Biology 24 (7): 1290-1296.


Hunter, G.K.

Keykhosravani, M., A. Doherty-Kirby, C.J. Zhang, D. Brewer, H.A. Goldberg, G.K. Hunter, and G. Lajoie. 2005. Comprehensive Identification of Post-Translational Modifications of Rat Bone Osteopontin by Mass Spectrometry. Biochemistry 44 (18): 6990-7003.

Nanci, A., R.M. Wazen, S.F. Zalzal, M. Fortin, H.A. Goldberg, G.K. Hunter, and D.L. Ghitescu. 2004. A Tracer Study With Systemically and Locally Administered Dinitrophenylated Osteopontin. Journal of Histochemistry & Cytochemistry 52 (12): 1591-1600.

Tye, C.E., G.K. Hunter, and H.A. Goldberg. 2005. Identification of the Type I Collagen-Binding Domain of Bone Sialoprotein and Characterization of the Mechanism of Interaction. Journal of Biological Chemistry 280 (14): 13487-13492.


Kari, L.

Freund, R., L. Kari, M. Oswald, and P. Sosik. 2005. Computationally Universal P Systems Without Priorities: Two Catalysts Are Sufficient. Theoretical Computer Science 330 (2): 251-266.

Kari, L., and S. Konstantinidis. 2005. Language Equations, Maximality and Error-Detection. Journal of Computer and System Sciences 70 (1): 157-178.

Kari, L., S. Konstantinidis, and P. Sosik. 2005. Bond-Free Languages: Formalizations, Maximality and Construction Methods. DNA Computing: 10th Annual Workshop on DNA Computing. Milan, Italy: C. Ferretti, G. Mauri, and C. Zandron (Eds.). Lecture Notes in Computer Science, 3384. Berlin: Springer. 169-181.

Kari, L., S. Konstantinidis, and P. Sosik. 2005. On Properties of Bond-Free DNA Languages. Theoretical Computer Science 334 (1-3): 131-159.

Kari, L., S. Konstantinidis, and P. Sosik. 2005. Operations on Trajectories With Applications to Coding and Bioinformatics. International Journal of Foundations of Computer Science 16 (3): 531-546.

Kari, L., S. Konstantinidis, and P. Sosik. 2005. Preventing Undesirable Bonds Between DNA Codewords. DNA Computing: 10th Annual Workshop on DNA Computing. Milan, Italy: C. Ferretti, G. Mauri, and C. Zandron (Eds.). Lecture Notes in Computer Science, 3384. Berlin: Springer. 182-191.

Kari, L., S. Konstantinidis, and P. Sosik. 2004. Substitution on Trajectories. Theory Is Forever: Essays Dedicated to Arto Salomaa on the Occasion of His 70th Birthday. J. Karhunaki, H. Maurrer, G. Paun, and G. Rozenberg. Lecture Notes in Computer Science 3113. Berlin: Springer-Verlag. 145-158.

Kari, L., S. Konstantinidis, and P. Sosik. 2005. Substitutions, Trajectories and Noisy Channels. Implementation and Application of Automata: 9th International Conference. Kingston, ON: M. Domaratzki, A. Okhotin, K. Salomaa, and S. Yu (Eds.). Lecture Notes in Computer Science, 3317. Berlin: Springer. 202-212.

Kari, L., S. Konstantinidis, P. Sosik, and G. Thierrin. 2005. On Hairpin-Free Words and Languages. Developments in Language Theory: 9th Internatinal Conference Proceedings. Palermo, Italy: C. de Felice, and A. Restivo (Eds.). Lecture Notes in Computer Science, 3572. Berlin: Springer. 296-307.

Kari, L., C. Martin-Vide, and A. Paun. 2004. On the Universality of P Systems With Minimal Symport/Antiport Rules. Aspects of Molecular Computing: Essays dedicated to Tom Head on the occasion of his 70th birthday. N. Jonoska, G. Paun, and G. Rozenberg. Lecture Notes in Computer Science, 2950. 254-265.

Kari, L., and P. Sosik. 2005. Aspects of Shuffle and Deletion on Trajectories. Theoretical Computer Science 332 (1-3): 47-61.

Wang, Y.W., K. Hill, S. Singh, and L. Kari. 2005. The Spectrum of Genomic Signatures: From Dinucleotides to Chaos Game Representation. Gene 346: 173-185.


Konermann, L.

Schermann, S.M., D.A. Simmons, and L. Konermann. 2005. Mass spectrometry-based approaches to protein-ligand interactions. Expert Review of Proteomics 2: 475-485.


Lajoie, G.

Canton, D.A., M.E.K. Olsten, K. Kim, A. Doherty-Kirby, G. Lajoie, J.A. Cooper, and D.W. Litchfield. 2005. The Pleckstrin Homology Domain-Containing Protein Ckip-1 Is Involved in Regulation of Cell Morphology and the Actin Cytoskeleton and Interaction With Actin Capping Protein. Molecular and Cellular Biology 25 (9): 3519-3534.

Dempsey, B.R., M. Wrona, J.M. Moulin, G.B. Gloor, F. Jalilehvand, G. Lajoie, G.S. Shaw, and B.H. Shilton. 2004. Solution NMR Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the Seca Atpase. Biochemistry 43 (29): 9361-9371.

Dobransky, T., A. Doherty-Kirby, A.R. Kim, D. Brewer, G. Lajoie, and R.J. Rylett. 2004. Protein Kinase C Isoforms Differentially Phosphorylate Human Choline Acetyltransferase Regulating Its Catalytic Activity. Journal of Biological Chemistry 279 (50): 52059-52068.

Keykhosravani, M., A. Doherty-Kirby, C.J. Zhang, D. Brewer, H.A. Goldberg, G.K. Hunter, and G. Lajoie. 2005. Comprehensive Identification of Post-Translational Modifications of Rat Bone Osteopontin by Mass Spectrometry. Biochemistry 44 (18): 6990-7003.

Kim, A.R., A. Doherty-Kirby, G. Lajoie, R.J. Rylett, and B.H. Shilton. 2005. Two Methods for Large-Scale Purification of Recombinant Human Choline Acetyltransferase. Protein Expression and Purification 40 (1): 107-117.

Perdicakis, B., H.J. Montgomery, G.L. Abbott, D. Fishlock, G.A. Lajoie, J.G. Guillemette, and E. Jervis. 2005. Photocontrol of Nitric Oxide Production in Cell Culture Using a Caged Isoform Selective Inhibitor. Bioorganic & Medicinal Chemistry 13 (1): 47-57.

Simmons, D.A., D.J. Wilson, G.A. Lajoie, A. Doherty-Kirby, and L. Konermann. 2004. Subunit Disassembly and Unfolding Kinetics of Hemoglobin Studied by Time-Resolved Electrospray Mass Spectrometry. Biochemistry 43 (46): 14792-14801.


Litchfield, D.W.

Canton, D.A., M.E.K. Olsten, K. Kim, A. Doherty-Kirby, G. Lajoie, J.A. Cooper, and D.W. Litchfield. 2005. The Pleckstrin Homology Domain-Containing Protein CKIP-1 Is Involved in Regulation of Cell Morphology and the Actin Cytoskeleton and Interaction With Actin Capping Protein. Molecular and Cellular Biology 25 (9): 3519-3534.

Litchfield, D.W. 2005. Casein kinase II alpha 2: Molecule Page Overview. AfCS-Nature Signaling Gateway Casey, P.J. Available: http://www.signaling-gateway.org/molecule/query?afcsid=A000108

Olsten, M.E.K., D.A. Canton, C.J. Zhang, P.A. Walton, and D.W. Litchfield. 2004. The Pleckstrin Homology Domain of Ck2 Interacting Protein-1 Is Required for Interactions and Recruitment of Protein Kinase Ck2 to the Plasma Membrane. Journal of Biological Chemistry 279 (40): 42114-42127.

Olsten, M.E.K., and D.W. Litchfield. 2004. Order or Chaos? An Evaluation of the Regulation of Protein Kinase Ck2. Biochemistry and Cell Biology-Biochimie Et Biologie Cellulaire 82 (6): 681-693.

Olsten, M.E.K., J.E. Weber, and D.W. Litchfield. 2005. Ck2 Interacting Proteins: Emerging Paradigms for Ck2 Regulation? Molecular and Cellular Biochemistry 274 (1-2): 115-124.

Stolk, M., E. Cooper, G. Vilk, D.W. Litchfield, and J.R. Hammond. 2005. Subtype-Specific Regulation of Equilibrative Nucleoside Transporters by Protein Kinase Ck2. Biochemical Journal 386: 281-289.


Ma, B.

Han, Y.H., B. Ma, and K.Z. Zhang. 2005. An Automata Approach to Match Gapped Sequence Tags Against Protein Database. Implementation and Application of Automata: 9th International Conference. Kingston, ON: M. Domaratzki, A. Okhotin, K. Salomaa, and S. Yu (Eds.). Lecture Notes in Computer Science, 3317. Berlin: Springer. 167-177.

Kisman, D., M. Li, B. Ma, and L. Wang. 2005. Tpatternhunter: Gapped, Fast and Sensitive Translated Homology Search. Bioinformatics 21 (4): 542-544.

Li, M., X. Chen, X. Li, B. Ma, and P.M.B. Vitanyi. 2004. The Similarity Metric. IEEE Transactions on Information Theory 50 (12): 3250-3264.

Ma, B., L.Y. Wu, and K.Z. Zhang. 2005. Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. Computational Science - ICCS 2005, Part II. Atlanta, GA: V.S. Sunderam, G.D. Albada, P.M.A. Sloot, and J. Dongarra (Eds.). Lecture Notes in Computer Science, 3515. Berlin: Springer. 960-967.

Ma, B., and K.Z. Zhang. 2005. On the Longest Common Rigid Subsequence Problem. Combinatorial Pattern Matching: 16th Annual Symposium . Jeju Island, Korea: A. Apostolico, M. Crochemore, and K. Park (Eds.). Lecture Notes in Computer Science, 3537. Berlin: Springer. 11-20.

Ma, B., K.Z. Zhang, and C.Z. Liang. 2005. An Effective Algorithm for Peptide De Novo Sequencing From Ms/Ms Spectra. Journal of Computer and System Sciences 70 (3): 418-430.

Xu, J., D.G. Brown, M. Li, and B. Ma. 2004. Optimizing Multiple Spaced Seeds for Homology Search. Combinatorial Pattern Matching: 15th Annual Symposium . Istanbul, Turkey: C.S. Suleyman, S. Muthukrishnan, and U. Dogrusoz (Eds.). Lecture Notes in Computer Science, 3109. Berlin: Springer. 47-58.


McLachlin, D.T.

Chang, E.J., V. Archambault, D.T. McLachlin, A.N. Krutchinsky, and B.T. Chait. 2004. Analysis of Protein Phosphorylation by Hypothesis-Driven Multiple-Stage Mass Spectrometry. Analytical Chemistry 76 (15): 4472-4483.

Csanady, L., D. Seto-Yeung, K.W. Chan, C. Cenciarelli, B.B. Angel, J. Qin, D.T. McLachlin, A.N. Krutchinsky, B.T. Chait, A.C. Nairn, and D.C. Gadsby. 2005. Preferential Phosphorylation of R-domain Serine 768 Dampens Activation of CFTR Channels by PKA. The Journal of General Physiology 125 (2): 171-186.

Matsushita, M., J.A. Kozak, Y. Shimizu, D.T. McLachlin, H. Yamaguchi, F.Y. Wei, K. Tomizawa, H. Matsui, B.T. Chait, M.D. Cahalan, and A.C. Nairn. 2005. Channel Function Is Dessociated from the Intrinsic Kinase Activity and Autophosphorylation of TRPM7/ChaK1. Journal of Biological Chemistry 280 (21): 20793-20803.

Motz, C., T. Hornung, M. Kersten, D.T. Mclachlin, S.D. Dunn, J.G. Wise, and P.D. Vogel. 2004. The Subunit B Dimer of the Fof1-Atp Synthase Interaction With F-1-Atpase as Deduced by Site-Specific Spin-Labeling. Journal of Biological Chemistry 279 (47): 49074-49081.


Meakin, S.O.

Liu, H.Y., J.I.S. Macdonald, T. Hryciw, C.H. Li, and S.O. Meakin. 2005. Human Tumorous Imaginal Disc 1 (Tid1) Associates With Trk Receptor Tyrosine Kinases and Regulates Neurite Outgrowth in Nnr5-Trka Cells. Journal of Biological Chemistry 280 (20): 19461-19471.

Robinson, K.N., K. Manto, R.J. Buchsbaum, J.I.S. Macdonald, and S.O. Meakin. 2005. Neurotrophin-Dependent Tyrosine Phosphorylation of Ras Guanine-Releasing Factor 1 and Associated Neurite Outgrowth Is Dependent on the Hike Domain of Trka. Journal of Biological Chemistry 280 (1): 225-235.


Petersen, N.O.

Kim, P.S.G., N.O. Petersen, T.K. Sham, and Y.F. Hu. 2004. Soft X-Ray Excited Optical Luminescence (Xeol) Studies of Fluorescein Isothiocyanate (Fitc) and Fitc-Labeled Proteins. Chemical Physics Letters 392 (1-3): 44-49.

Lee, C.C., and N.O. Petersen. 2004. The Triple Layer Model: a Different Perspective on Lipid Bilayers. Journal of the Chinese Chemical Society 51 (5B): 1183-1191.

Nohel, A., E. Keating, T.M. Underhill, P. Knaus, and N.O. Petersen. 2005. Dynamics and Interaction of Caveolin-1 Isoforms With Bmp-Receptors. Journal of Cell Science 118 (3): 643-650.

Panda, A.K., K. Nag, R.R. Harbottle, F. Possmayer, and N.O. Petersen. 2004. Thermodynamic Studies on Mixed Molecular Langmuir Films Part 2. Mutual Mixing of Dppc and Bovine Lung Surfactant Extract With Long-Chain Fatty Acids. Colloids and Surfaces A-Physicochemical and Engineering Aspects 247 (1-3): 9-17.

Possmayer, F.N.K., K. Rodriguez-Capote, A.K. Panda, L. Frederick, S.A. Hearn, N.O. Petersen, S. Schurch, and F. Possmayer. 2004. Disparate Effects of Two Phosphatidylcholine Binding Proteins, C-Reactive Protein and Surfactant Protein a, on Pulmonary Surfactant Structure and Function. American Journal of Physiology-Lung Cellular and Molecular Physiology 287 (6): L1145-L1153.


Pickering, J.G.

Argmann, C.A., J.Y. Edwards, C.G. Sawyez, C.H. O'Neil, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2005. Regulation of Macrophage Cholesterol Efflux Through Hydroxymethylglutaryl-Coa Reductase Inhibition. Journal of Biological Chemistry 280 (23): 22212-22221.

Argmann, C.A., C.G. Sawyez, S.H. Li, Z.X. Nong, R.A. Hegele, J.G. Pickering, and M.W. Huff. 2004. Human Smooth Muscle Cell Subpopulations Differentially Accumulate Cholesteryl Ester When Exposed to Native and Oxidized Lipoproteins. Arteriosclerosis Thrombosis and Vascular Biology 24 (7): 1290-1296.

Fera, E., C. O'neil, W. Lee, S.H. Li, and J.G. Pickering. 2004. Fibroblast Growth Factor-2 and Remodeled Type I Collagen Control Membrane Protrusion in Human Vascular Smooth Muscle Cells - Biphasic Activation of Rac1. Journal of Biological Chemistry 279 (34): 35573-35582.

Leung, W.C.Y., A. Lawrie, S. Demaries, H. Massaeli, A. Burry, S. Yablonsky, J.M. Sarjeant, E. Fera, E. Rassart, J.G. Pickering, and M. Rabinovitch. 2004. Apolipoprotein D and Platelet-Derived Growth Factor-Bb Synergism Mediates Vascular Smooth Muscle Cell Migration. Circulation Research 95 (2): 179-186.


Possmayer, F.

Panda, A.K., K. Nag, R.R. Harbottle, F. Possmayer, and N.O. Petersen. 2004. Thermodynamic Studies on Mixed Molecular Langmuir Films Part 2. Mutual Mixing of Dppc and Bovine Lung Surfactant Extract With Long-Chain Fatty Acids. Colloids and Surfaces A-Physicochemical and Engineering Aspects 247 (1-3): 9-17.

Nag, K., K. Rodriguez-Capote, A.K. Panda, L. Frederick, S.A. Hearn, N.O. Petersen, S. Schurch, and F. Possmayer. 2004. Disparate Effects of Two Phosphatidylcholine Binding Proteins, C-Reactive Protein and Surfactant Protein a, on Pulmonary Surfactant Structure and Function. American Journal of Physiology-Lung Cellular and Molecular Physiology 287 (6): L1145-L1153.

Possmayer, F.N.K., K. Rodriguez-Capote, A.K. Panda, L. Frederick, S.A. Hearn, N.O. Petersen, S. Schurch, and F. Possmayer. 2004. Disparate Effects of Two Phosphatidylcholine Binding Proteins, C-Reactive Protein and Surfactant Protein a, on Pulmonary Surfactant Structure and Function. American Journal of Physiology-Lung Cellular and Molecular Physiology 287 (6): L1145-L1153.

Serrano, A.G., A. Cruz, K. Rodriguez-Capote, F. Possmayer, and J. Perez-Gil. 2005. Intrinsic Structural and Functional Determinants Within the Amino Acid Sequence of Mature Pulmonary Surfactant Protein Sp-B. Biochemistry 44 (1): 417-430.


Rodenhiser, D.I.

Butcher, D.T., D.N. Mancini-Dinardo, T.K. Archer, and D.I. Rodenhiser. 2004. DNA binding sites for putative methylation boundaries in the unmethylated region of the BRCA 1 promoter. International Journal of Cancer 111 (5): 669-678.


Rozmahel, R.

Mastrangelo, P., P.M. Mathews, M.A. Chishti, S.D. Schmidtt, Y.J. Gu, J. Yang, M.J. Mazzella, J. Coomaraswamy, P. Horne, B. Strome, H. Pelly, G. Levesque, C. Ebeling, Y. Jiang, R.A. Nixon, R. Rozmahel, P.E. Fraser, P. St George-Hyslop, G.A. Carlson, and D. Westaway. 2005. Dissociated Phenotypes in Presenilin Transgenic Mice Define Functionally Distinct Gamma-Secretases. Proceedings of the National Academy of Sciences of the United States of America 102 (25): 8972-8977.


Rupar, C.A.

Tadiboyina, V.T., A. Rupar, P. Atkison, A. Feigenbaum, J. Kronick, J. Wang, and R.A. Hegele. 2005. Novel Mutation in Dguok in Hepatocerebral Mitochondrial Dna Depletion Syndrome Associated With Cystathioninuria. American Journal of Medical Genetics Part A 135A (3): 289-291.


Shaw, G.S.

Dempsey, B.R., M. Wrona, J.M. Moulin, G.B. Gloor, F. Jalilehvand, G. Lajoie, G.S. Shaw, and B.H. Shilton. 2004. Solution Nmr Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the Seca Atpase. Biochemistry 43 (29): 9361-9371.

Merkley, N., and G.S. Shaw. 2004. Solution Structure of the Flexible Class Ii Ubiquitin-Conjugating Enzyme Ubc1 Provides Insights for Polyubiquitin Chain Assembly. Journal of Biological Chemistry 279 (45): 47139-47147.


Shilton, B.H.

Dempsey, B.R., M. Wrona, J.M. Moulin, G.B. Gloor, F. Jalilehvand, G. Lajoie, G.S. Shaw, and B.H. Shilton. 2004. Solution Nmr Structure and X-Ray Absorption Analysis of the C-Terminal Zinc-Binding Domain of the Seca Atpase. Biochemistry 43 (29): 9361-9371.

Humayun, S., S.J. Wardle, B.H. Shilton, P.A. Pribil, J. Liburd, and D.B. Haniford. 2005. Tn10 Transposase Mutants With Altered Transpososome Unfolding Properties Are Defective in Hairpin Formation. Journal of Molecular Biology 346 (3): 703-716.

Kim, A.R., A. Doherty-Kirby, G. Lajoie, R.J. Rylett, and B.H. Shilton. 2005. Two Methods for Large-Scale Purification of Recombinant Human Choline Acetyltransferase. Protein Expression and Purification 40 (1): 107-117.

Sebulsky, M.T., C.D. Speziali, B.H. Shilton, D.R. Edgell, and D.E. Heinrichs. 2004. Fhud1, a Ferric Hydroxamate-Binding Lipoprotein in Staphylococcus Aureus - a Case of Gene Duplication and Lateral Transfer. Journal of Biological Chemistry 279 (51): 53152-53159.


Skerjanc, I.S.

Gianakopoulos, P.J., and I.S. Skerjanc. 2005. Hedgehog Signaling Induces Cardiomyogenesis in P19 Cells. Journal of Biological Chemistry 280 (22): 21022-21028.

Mckinney, J.L., D.J. Murdoch, J. Wang, J. Robinson, C. Biltcliffe, H.M.R. Khan, P.M. Walker, J. Savage, I. Skerjanc, and R.A. Hegele. 2004. Venn Analysis as Part of a Bioinformatic Approach to Prioritize Expressed Sequence Tags From Cardiac Libraries. Clinical Biochemistry 37 (11): 953-960.


Trevithick, J.R.

Trevithick, J.R., D. Massel, J.M. Robertson, S. Tomany, and R. Wall. 2004. Model Study of AREDS Antioxidant Supplementation of Amd Compared to Visudyne: a Dominant Strategy? Ophthalmic Epidemiology 11 (5): 337-346.


Turley, E.A.

Nedvetzki, S., E. Gonen, N. Assayag, R. Reich, R.O. Williams, R.L. Thurmond, J.F. Huang, B.A. Neudecker, F.S. Wang, E.A. Turley, and D. Naor. 2004. Rhamm, a Receptor for Hyaluronan-Mediated Motility, Compensates for Cd44 in Inflamed Cd44-Knockout Mice: a Different Interpretation of Redundancy. Proceedings of the National Academy of Sciences of the United States of America 101 (52): 18081-18086.


Yeung, K.K.C.

Nesbitt, C.A., J.T.M. Lo, and K.K.C. Yeung. 2005. Over 1000-Fold Protein Preconcentration for Microliter-Volume Samples at a Ph Junction Using Capillary Electrophoresis. Journal of Chromatography A 1073 (1-2): 175-180.

Zhang, H.X., and K.K.C. Yeung. 2004. Nanoliter-Volume Selective Sampling of Peptides Based on Isoelectric Points for Maldi-Ms. Analytical Chemistry 76 (22): 6814-6818.


Zhang, K.Z.

Han, Y.H., B. Ma, and K.Z. Zhang. 2005. An Automata Approach to Match Gapped Sequence Tags Against Protein Database. Implementation and Application of Automata: 9th International Conference. Kingston, ON: M. Domaratzki, A. Okhotin, K. Salomaa, and S. Yu (Eds.). Lecture Notes in Computer Science, 3317. Berlin: Springer. 167-177.