1. What if the first 192 clones does not produce a targeted ES cell line?
The expected frequency of homologous recombination in ES cells varies dramatically depending on the genomic region to be targeted. Typically, 192 selected colonies should identify at least 2-3 targeted events. In the event that a positive 192 clones
2. Will the TGT perform genotype analysis? Why or why not?
Due to the variability for each genotype assay and the time demands on the staff of the LRTGT, we do not offer genotyping services. However, the LRTGT does offer support in the way of laboratory space and equipment to perform to analysis and will provide technical support in this area.
3. Can you guarantee correctly targeted clones?
Several factors affect the integration of targeting vectors that are beyond our control, most especially the genomic locus that is being targeting. While we will make every effort to get a targeted clone and will work with each laboratory to increase the chances of success, we can not guarantee that a targeted ES clone will be obtained.
4. What type of analysis is required for genotyping?
Each laboratory should work out a strategy to identify targeted integration of the transgene prior to proceeding with the project. This would involve Southern blotting with a probe external to the targeting vector and a genomic DNA digestion that would delineate the endogenous locus from the targeted locus. While PCR-based strategies can be used for genotyping mice for hetero and homozygosity, we strongly discourage the use of this strategy for screening ES cell clones.
5. How many clones will be injected?
Typically, we inject up to three different clones of targeted ES cells clones into 45 blastocysts each. If desired, we can inject additional clones, but this will be done at an additional cost to the investigator.
6. Are aggregation offered by the LRTGT?
Currently, we do not offer this service.
7. What ES lines are used?
The LRTGT will perform blastocyst injection of any ES cell type, however; we are currently only doing gene targeting in R1 (SvJ129 background) ES cells.
8. What is the price for gene targeting?
The standard rates for all service can be found here. For specialized services, please contact the Scientific Director.
9. What, if any, are the guarantees?
We guarantee the best possible effort in obtaining chimeric mice from gene targeted ES cells. However, given the variability of targeting specific loci within the genome, we do not make any guarantee of success on this aspect of the work.